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生物信息学分析实验报告

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来源:https://www.bjmy2z.cn/gaokao
2021-01-30 02:47
tags:

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2021年1月30日发(作者:三级钢)


1



分别写出


2010


年以来,


国际上与


Ovarian cancer



Breast cancer

< br>、


Leukemia


相关的文献有多少篇?写出


3


篇研究性论文标题和摘要,


写出


5


篇综述性论文标题和摘要;






数据库 :科学引文索引数据库


(SCI



Sc ience Citation Index)





Ovarian cancer


相关 的文献有


11,303





Breast cancer


相关的 文献有


56,209





Leukemia


相关的文献有

< br>32,912




综述性论文标题和摘要



1.



Hemochromatosis and ovarian cancer



摘要


:



Evaluation


of:


Gannon


PO,


Medelci


S,


Le


Page


C et


al.


Impact


of


hemochromatosis gene


(HFE) mutations on epithelial ovarian cancer risk and prognosis. Int. J. Cancer 128(10), 2326-2334


(2011).


The


frequency


of


two


mutations


(C282Y


and


D62H)


of


the


hemochromatosis


gene


were


investigated in women with ovarian cancer. A single allele mutation of the C282Y but not the H63D


gene product was detected in 8-9% of women with benign ovarian tumors (n = 124) and ovarian


cancers (n = 360) compared with 2.5% for controls (n = 80) representing a 4.9-fold increase in risk.


With high-grade serous ovarian cancers (n = 179), the survival rate of women with a single allele


C282Y


mutation


was


reduced


from


39


to


19


months.


These


results


implicate


mutations


of


the


hemochromatosis


gene


in


the


generation


and


severity


of


ovarian


cancers,


which


may


have


prognostic value.



2.



Differences between women who pursued genetic testing for hereditary breast


and ovarian cancer and their at-risk relatives who did not.



摘要


:


Purpose/Objectives: To (a) examine differences in appraisals of hereditary breast and ovarian


cancer (HBOC), psychological distress, family environment, and decisional conflict between women


who pursued genetic testing and their at-risk relatives who did not, and (b) examine correlations


among


appraisals


of


HBOC,


psychological


distress,


family


environment,


and


decisional


conflict


regarding genetic testing in these two cohorts of : Descriptive, cross-sectional cohort


g:


Two


clinics


affiliated


with


a


major


research


university


in


the


midwestern


United


: 372 women aged 18 years and older. 200 pursued genetic testing for BRCA1 and


BRCA2 mutations (probands) and 172 of their female relatives who had a greater than 10% prior


probability of being a mutation carrier but had not pursued s: After providing informed


consent,


probands


and


relatives


were


mailed


self- administered



Research


Variables:


Perceived


risk,


knowledge


of


HBOC


risk


factors


and


modes


of


gene


inheritance,


perceived


severity,


perceived


controllability,


psychological


distress,


family


relationships,


family


communication,


and


decisional


conflict


about


genetic


gs:


T


tests


revealed


that


probands perceived higher risk and had more psychological distress associated with breast cancer.


Probands had more knowledge regarding risk factors and gene inheritance, and greater decisional


conflict


regarding


genetic testing.


Relatives


reported higher perceived


severity


and


controllability.


No differences were observed in family relationships and family communication between probands


and


relatives.


Pearson


correlations


revealed


different


patterns


in


knowledge,


perceived


controllability,


family


relationships,


and


decisional


conflict


between


probands


and


sions: Significant differences exist between women who pursue genetic testing and


those


who


do


not.


The


family


environment


influences


adjustment


to


HBOC


and


decisions


about


genetic ations for Nursing: Enhancing the family communication process about HBOC


can provide informational and emotional support to high-risk women and promote decision making


about genetic testing.



3.



Incidence


and


mortality


in


epithelial


ovarian


cancer


by


family


history


of


any


cancer



摘要


:


Practically all data on familial risk in ovarian and other cancers are based on incident cancer,


whereas


familiality


in


cancer


mortality


is


largely


unknown.


If


fatal


forms


of


cancer


are


a


highly


familial subtype, then familial risk for mortality may exceed that of incidence, which is relevant for


clinical decision making and counseling. Ovarian cancer patients in the nationwide Swedish Family


Cancer Database were classified according to fatal and nonfatal (incident) family history. Familial


risks for incident and fatal ovarian cancer were calculated for offspring based on their parental or


sibling


family


history


of


any


cancer


using


standardized


incidence


ratios


(SIRs)


for


incidence


and


standardized mortality ratios (SMRs) for mortality. Offspring without family history were referents.


The database included 24,757 mothers and 8138 daughters with


ovarian cancer. When a mother


had ovarian cancer, the SIR for incident ovarian cancer in daughters was 2.69, and when a sister


had ovarian cancer it was 3.49. The SMRs for fatal cancer by fatal cancer in probands were 3.39


and 5.80, respectively. For fatal serous cancers among siblings, the SMR was 6.16, compared with


10.01 for the endometrioid type.


Ovarian cancer was associated with maternal (SIR, 1.22; SMR,


1.56) and sororal breast cancer (SIR, 1.27). Another discordant association was between ovarian


and paternal prostate cancer (SIR, 1.12; SMR, 1.66). Fatal familial risks were higher for concordant


ovarian, ovarian-breast, and ovarian-prostate cancers than the corresponding incident risks. This


may suggest that highly fatal subtypes exist for these cancers, calling for genetic dissection. Cancer


2011. 2011 American Cancer Society. Copyright 2011 American Cancer Society.



4.



Knock-down


of


amphiregulin


inhibits


cellular


invasion


in


inflammatory


breast


cancer.



摘要


:


We have previously shown that SUM-149 human breast cancer cells require an amphiregulin


(AREG)


autocrine


loop


for


cell


proliferation.


We


also


demonstrated


that


AREG


can


increase


epidermal


growth


factor


receptor


(EGFR)


stability


and


promote


EGFR


localization


to


the


plasma


membrane. In the present studies we successfully knocked-down AREG expression in SUM-149


cells


by


lentiviral


infection


of


AREG


shRNA.


In


the


absence


of


AREG


expression,


SUM-149


cell


growth


was


slowed,


but


not


completely


inhibited.


Furthermore,


cells


infected


with


AREG


shRNA


constructs showed an increase in EGFR protein expression by Western blot. Immunofluorescence


and confocal microscopy showed that following AREG knock-down, EGFR continued to localize to


the


cell


surface.


Soft


agar


assays


demonstrated


that


AREG


knock-down


cells


retain


anchorage-independent growth capacity. Additionally mammosphere forming assays and Adefluor


staining


analysis


showed


that


knock-down


of


AREG


expression


did


not


affect


the


expression


of


stem


cell


phenotypes.


However,


following


AREG


knock-down,


SUM-149


cells


demonstrated


a


dramatic


decrease


in


their


ability


to


invade


a


Matrigel


matrix.


Consistent


with


this


observation,


microarray analysis comparing cells infected with a non- silencing vector to the AREG knock-down


cells,


identified


genes


associated


with


the


invasive


phenotype


such


as


RHOB


and


DKK1,


and


networks associated with cell motility such as integrin-linked kinase signaling, and focal adhesion


kinase signaling. AREG was also found to modulate WNT and Notch signaling in these cells. Thus,


AREG functions in regulating the invasive phenotype, and we propose that this regulation may be


through altered signaling that occurs when AREG activates plasma membrane localized EGFR. J.


Cell. Physiol. 226: 2691-2701, 2011. 2011 Wiley-Liss, Inc. Copyright 2011 Wiley-Liss, Inc.



5.



Prognostic


impact


of


c-KIT


mutations


in


core


binding


factor


acute


myeloid


leukemia.



摘要


:


This study sought to define the prognostic impact of c-KIT mutations in core binding factor


acute myeloid leukemia (CBF AML) patients. A total of 116 patients diagnosed as CBF AML in Asan


Medical


Center


from


January 1999


to


May


2010


were


enrolled


in


this study. We


applied melting


curve analyses and direct sequencing methods to confirm c-KIT mutations in exon 17 (mutKIT17)


and exon 8 (mutKIT8). Of the total 116 patients, mutKIT17 were found in 36 (31%) and mutKIT8


were


found


in


7


(6%).


In


patients


with


t(8;21),


prognosis


was


significantly


poorer


in


those


with


mutKIT17 compared to those without the mutation. This difference was limited to adults. In patients


with inv(16), there was no prognostic impact of c-KIT mutations. Therefore, an analysis of mutKIT17


in adult CBF AML patients with t(8;21) is recommended as a means to predict prognosis. Copyright


2011 Elsevier Ltd. All rights reserved.



研究性论文标题和摘要



1.


Prolactin


increases


survival


and


migration


of


ovarian


cancer


cells:


Importance


of


prolactin


receptor


type


and


therapeutic


potential


of


S179D


and


G129R


receptor


antagonists.


摘要


:


Variably- spliced prolactin receptors (PRLRs) and PRL are expressed by the ovarian cancer cell


lines, TOV-112D, OV-90 and TOV-21G. Incubation in the PRLR antagonists, G129R- or S179D-PRL, or


anti-PRL reduced cell number, indicating a functional autocrine PRL growth loop. Added PRL promoted,


and


the


antagonists


decreased,


cell


migration.


When


cells


were


stressed,


added


PRL


decreased


apoptosis and increased survival, and the antagonists had the opposite effect. Cells expressing higher


long:short


PRLR


ratios


had


increased


growth,


survival


and


migration


in


response


to


PRL.


Results


suggest


that


PRLR


antagonists


may


be


therapeutically


beneficial


in


ovarian cancer.


Copyright


2011


Elsevier Ireland Ltd. All rights reserved


2.


(R)-FTY720


methyl


ether


is


a


specific


sphingosine


kinase


2


inhibitor:


Effect


on


sphingosine


kinase


2


expression


in


HEK


293


cells


and


actin


rearrangement


and


survival of MCF-7 breast cancer cells


摘要


:



Sphingosine


kinase


2


(SK2)


catalyses


the


conversion


of


sphingosine


to


the


bioactive


lipid


sphingosine


1-phosphate


(Si


P).


We


report


here,


the


stereospecific


synthesis


of


an


analogue


of


FTY720 called (R)-FTY720-OMe, which we show is a competitive inhibitor of SK2. (R)-FTY720-OMe


failed


to


inhibit


sphingosine


kinase


1


activity,


thereby


demonstrating


specificity


for


SK2.


Prolonged


treatment


of


HEK


293


cells


with


(R)-FTY720-OMe


also


induced


a


reduction


in


SK2


expression.


In


addition. (R)-FTY720-OMe inhibited DNA synthesis and prevented S1P-stimulated rearrangement of


actin in MCF-7 breast cancer cells. These findings demonstrate that SK2 functions as a pro-survival


protein


and


is


involved


in


promoting


actin


rearrangement


into


membrane


ruffles/lamellipodia


in


response to SIP in MCF-7 breast cancer cells. (C) 2011 Elsevier Inc. All rights reserved




3.



The BH3-only protein Noxa is stimulated during apoptosis of chronic lymphocytic


leukemia cells triggered by M2YN, a new plant-derived extract.



摘要


:



Deficiency


of


apoptosis


is


a


hallmark


of


chronic


lymphocytic


leukemia


(CLL) cells.


M2Yn


is


a


natural extract from plants of central Asia, identified for its antiangiogenic properties and its ability to


block the migration of malignant cells. Here, we report that in vitro treatment of cells derived from CLL


patients with M2Yn results in internucleosomal DNA fragmentation, phosphatidylserine externalization,


mitochondrial membrane depolarization, caspase-3 activation and cleavage of the caspase substrate


PARP-1. The extents of these effects depend on the patients and are mostly comparable to those of


flavopiridol


or


hyperforin,


two


known


plant- derived


apoptosis


inducers


of


CLL


cells.


M2Yn


does


not


modulate Mcl-1 expression, while downregulation of this antiapoptotic protein is involved in the action


of flavopiridol. By contrast, M2Yn, like hyperforin, upregulates the Noxa protein, possibly by inhibiting


proteasomal


activity.


This


BH3-only


protein


is


known


to


trigger


the


activation


of


the


pro-apoptotic


protein


Bak


through


displacement


of


the


Mcl-1/Bak


complex


at


the


mitochondrial


membrane,


as


actually


observed


here


in


M2Yn-treated


cells.


Our


data,


therefore,


show


that


M2Yn


can


induce


the


caspase-dependent mitochondrial pathway of apoptosis in CLL cells via a mechanism resembling that


of hyperforin. Our data also confirm that the BH3-only protein Noxa is a relevant target for CLL therapy.


< p>
2






P53






BRCA1


< p>





BRCA2




< p>


RAD51D






MSH6


”< /p>




MLH1



为关键词,在


NCBI


的网站上搜索人 的序列,要


求列出下列信息:


物种的拉丁文、

< br>序列的


ACCNUM


和碱基序列,



找出这些基因在酵母、


果蝇和小鼠中的同源基因,


列出物种的拉丁文,


序列的


ACCNUM





Saccharomyces


ce revisiae



Drosophila


melanogaster



Mus


Musculus




P53




Homo sapiens


NC_000017.10


Chromosome: 17; NC_000017.10 (7571720..7590863, complement)



Saccharomyces cerevisiae


同源基因为


BK006938.2



Drosophila melanogaster


同源基因为


BT021431.1




Mus Musculus


同源基因为


AK156276.1



BRCA1




Homo sapiens


NC_000017.10


Chromosome: 17; NC_000017.10 (41196312..41277500, complement)



Saccharomyces cerevisiae


同源基因为


BK006949.2



Drosophila melanogaster


同源基因为


AE014134.5



Mus Musculus


同源基因为


AL590996.12



BRCA2




Homo sapiens


NC_000013.10


Chromosome: 13; NC_000013.10 (32889617..32973809)



Saccharomyces cerevisiae


同源基因为


BK006939



Drosophila melanogaster


同源基因为


AE014134



Mus Musculus


同源基因为


AC154885



RAD51D




Homo sapiens


NC_000017.10


Chromosome: 17; NC_000017.10 (33426811..33446888, complement)



Saccharomyces cerevisiae


同源基因为


S66120



Drosophila melanogaster


同源基因为


AE014298



Mus Musculus


同源基因为


AK011387



MSH6




Homo sapiens


NC_000002.11


Chromosome: 2; NC_000002.11 (48010221..48034092)



Saccharomyces cerevisiae


同源基因为


BK006942



Drosophila melanogaster


同源基因为


BT050543



Mus Musculus


同源基因为


AC087233



MLH1




Homo sapiens


NC_000003.11


Chromosome: 3; NC_000003.11 (37034841..37092337)



Saccharomyces cerevisiae


同源基因为


BK006940



Drosophila melanogaster


同源基因为


AE013599



Mus Musculus


同源基因为


AK171052



3


、请分别用核酸

< br>-


核酸、核酸


-


蛋白质的


blast


方法,分析以下这个序


列可能是一 个什么样的序列,要求列出:


blast


程序、比对的数据库、


相似性最高的序列的


ACCNUM


、< /p>


相似性最高序列所在的物种和相似

-


-


-


-


-


-


-


-



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